Last Published: Ratings: 10 8. Product s : Backup Exec. Backup Exec Please refer to software compatibility list each Backup Exec version. Click here for latest Backup Exec Note : This step is followed until BE Connect to the target host using a terminal session or Log On locally with super user, root, or administrator privileges. Doing so will cause difficult to diagnose installation errors. It is important to copy the.
Note : This is a one step command to extract and untar the file. Note: If the file does not have ". Or, in two commands as shown in Figure 1b below: Figure 1b :. Open Cases. Pending Downloads. Enterprise Software Enterprise Software Enterprise Software Distributed, Saas, and Security solutions to plan, develop, test, secure, release, monitor and manage enterprise digital services. Enterprise Software Distributed, Saas, and Security solutions to plan, develop, test, secure, release, monitor and manage enterprise digital services.
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Media Creation Tool 21H2 v. Windows Loader 2. Adobe Acrobat Pro DC v. The Blog Post also has links to additional KB articles on antivirus. This is an alternative to PXE. The Target Device Software version must be the same or older than the Citrix Provisioning server version. Do the following on the master VDA you intend to convert to a vDisk.
GUID in the root directory. If the file is found it will not place the write cache on that disk. The workaround for excessive retries in Citrix Provisioning 7. If the computer name cannot be retrieved from the bootstrap then the name defaults to the mac address. Even if you are not getting the Mac address for the target name and getting something different I would use this key to enable the extra processing on the target to get the targets name. You are correct, this should be turned on by default.
I will get it changed in the next release. By default, all names are lower case. If you want the name to be left alone use the following registry key:. From Citrix Knowledgebase article — Write Cache Set to Provisioning Services Target Device Falls Back to Server : we have seen that it may take longer for the drives to initialize and by increasing the time and the number of retries the local hard drive can be accessed.
You can increase this by using the following registry keys:. To disable the target device from using the time zone of the Citrix Provisioning server, set the following registry key in the vDisk image. The values must be modified in the registry of the master image to take effect during boot time. This however will disable to all users, even Admins. Dear Carl, thank you very much for help! All I have learned about Citrix I learned from your blog.
Hi Carl, i have a question if you can help me. I am currently migrating my citrix environment from vmware to hyperV for the hosts where my workers are only Currently i have converted half of my base images from vmware format VHD to hyperV format vhdx with no issue vms are booting from the new VHDX image on hyperV streamed from PVS i faced an issue now with the rest of my base images, where after converting them to vhdx they are not booting through VPS blue screen with message related to CVhdMP.
Will that cause performance issues? However, in testing we found, when we change it to EFI machine boots up without any error. However, there are multiple Win VMs are running in the environment. Fixed this and all worked like a charm. By default, the path names of the files are not displayed in the Display Manager. To turn them on:. You might not want to have the right-hand-side vertical toolbar that contains icons for some modelling operations 21 displayed:.
If you want to add to the extensions, the following functions are available:. If you want the fileselection to be filtered without having to use the "Filter" button, use the scripting function. If you like your files initially sorted by date rather than lexicographically, which is the default use:. Some people prefer that the fileselection for saving coordinates starts in the original directory rather than the directory from which they last imported coordinates.
This option is for them:. There is an compile-time option of adding a script interpreter. Currently the options are python and guile. It seems possible that in future you will be able to use both in the same executable. The binary distribution of Coot are linked with guile, others with python. Hundreds of commands are made available for use in scripting by using SWIG, some of which are documented here.
Other functions documented less well, but descriptions for them can be found at the end of this manual. Note that you type the commands in the upper entry widget and the command gets echoed in red and the return value and any output is displayed in the text widget lower green.
The typed command should be terminated with a carriage return To execute a script file from the command line use the --script filename arguments except when also using the command line argument --no-graphics , in which case you should use -s filename. After you have used the scripting window, you may have noticed that you can no longer kill Coot by using Ctrl-C in the console. To recover this ability:.
Coot has an optional embedded python interpreter. Thus the full power of python is available to you. This file should contain python commands that set your personal preferences. The scripting functions described in this manual are formatted suitable for use with guile, i.
The scheme interpreter is made available by embedding guile. This file should contain scheme commands that set your personal preferences. This state file contains information about the screen centre, the clipping, colour map rotation size, the symmetry radius, and other molecule related parameters such as filename, column labels, coordinate filename etc. A state file can be saved at any time using save-state which saves to file 0-coot. Use set-run-state-file-status i to change the behaviour: i is 0 to never run this state file at startup, i is 1 to get a dialog option this is the default and i is 2 to run the commands without question.
How do they do that? By default, each time a modification is made to a model, the old coordinates are written out The backups are kept in a backup directory and are tagged with the date and the history number lower numbers are more ancient Further Undo operations will continue to apply to this molecule until there are none left.
If for reasons of strange system 29 requirements you want to remove the path components of the backup file name you can do so using:. This is not available immediately after a modification This file should contain your most recent edits. In such a case, it is sensible for neatness purposes to immediately save the coordinates probably to the current directory so that you are not modifying a file in the backup directory.
It is sometimes useful to use this to orient the view and export this orientation to other programs. The orientation matrix of the view can be displayed in the console using:.
Occasionally you may want to know the space group of a particular molecule. Interactively for maps you can see it using the Map Properties button in the Molecule Display Control dialog.
There is a scripting interface function that returns the space group for a given molecule 32 :. To show the symmetry operators of a particular molecule use: get-symmetry imol which will return a list of strings. Sometimes molecular replacement solutions for example create models with chains non-optimally placed relative to each other - a symmetry-related copy would be more apealling but would be equivalent, crystalographically.
For example, to move the B chain to a symmetry-related position:. You can also use this dialog to speed it up a bit by decreasing the number of steps instead of turning it off. Coot and linearly interpolate between the views. The clipping planes a. There is only one parameter to change and it affects both the front and the back clipping planes The default is 0. There is a pink pointer at the centre of the screen that marks the rotation centre. The green axes showing the orientation of the molecule are displayed by default.
To remove them use the scripting function;. If you move the Pointer e. The ticks are at 1. Positions in 3D space can be annotated with 3D text. It is often better to use a map that is more realistic and stop the picture whizzing round.
It is best not to have other widgets overlaying the GL canvas as you do this. The contouring elapsed time 37 gives an indication of CPU performance. This will go away in due course. You are advised to run Coot so that you can see the console and the graphics window at the same time, since feedback from atom clicking for example is often written there rather than displayed in the graphics window.
Immediately after the coordinates have been read, the view is by default recentred to the centre of this new molecule and the molecule is displayed. The recentring of the view after the coordinates have been read can be turned off by unclicking the "Recentre? To disable the recentring of the view on reading a coordinates file via scripting, use: set-recentre-on-read-pdb 0.
And that affects just the reading of filename and not subsequent files. By default coot does not allow reading coordinates with duplicated sequence numbers. To enable the reading of files with duplicated sequence numbers use the function:.
The space group should be one of the xHM symbols listed for example in the CCP4 dictionary file syminfo. So, for example, "R 3 2 :H" should be used in preference to "H32". The reading multiple files using the GUI is not available at the moment. However the following scripting functions are available:. Typical usage of this might be:. Alternatively you can specify the files to be opened on the command line when you start coot see Section Command Line Arguments.
SHELX ". ShelxL atoms with negative PART numbers are given alternative configuration identifiers in lower case. Information about about a particular atom is displayed in the text console when you click using middle-mouse.
Do the same to toggle off the label. The newly centred atom is labelled by default. To turn this off use:. The atom colouring system in coot is unsophisticated. Typically, atoms are coloured by element: carbons are yellow, oxygens red, nitrogens blue, hydrogens white and everything else green see Section Display Manager for colour by chain. However, it is useful to be able to distinguish different molecules by colour, so by default coot rotates the colour map of the atoms i.
The amount of the rotation depends on the molecule number and a user-settable parameter:. Also one is able to select only the Carbon atoms to change colour in this manner: set-colour-map-rotation-on-read-pdb-c-only-flag 1.
The represention style of the molecule that has the active residue if any can be changed using the scroll wheel with Ctrl and Shift. The thickness width of bonds of individual molecules can be changed. This can be done via the Bond Parameters dialog or the scripting interface:. The default thickness is 3 pixels. The bond thickness also applies to the symmetry atoms of the molecule. The default bond thickness for new molecules can be set using:. It is important to understand that these ghosts are for displaying differences of NCS-related molecules by structure superposition, not displaying neighbouring NCS related molecules.
Sometimes SSM does not provide a good or even useful matrix. In that case, we can specify the residue range ourselves and let the LSQ algorithm provide the matrix. Typical usage: manual-ncs-ghosts 0 1 10 list "A" "B" "C". Coot can use the relative transformations of the NCS-related molecules in a coordinates molecule to transform maps. Note also that the internal representation of the map is not transformed. If you try to export a NCS overlay map you will get an untransformed map.
A transformed map only makes sense around a given point and when using transformed maps in Coot, this reference point is changed on the fly, thus allowing map transformations on the fly.
You need to turn on symmetry for molecule imol and set the displayed symmetry object type to "Display Near Chains". Coot provides the possibility to download coordinates from an OCA A pop-up entry box is displayed into which you can type a PDB accession code.
Coot will then connect to the web server and transfer the file. The downloaded coordinates are saved into a directory called coot-download. It is also possible to download mmCIF data and generate a map. This currently requires a properly formatted database structure factors mmCIF file Using this function we have the ability to download coordinates and view the map from structures in the Electron Density Server EDS at Uppsala University.
This is a much more robust and faster way to see maps from deposited structures. This function can be found under the File menu item. This feature was added with the assistance of Gerard Kleywegt. D 60, As well as the molecule number, there is the molecule name - very frequently the name of the file that was read in to generate the coordinates in coot initially.
However, this is only a molecule name and should not be confused with the filename to which the coordinates are saved. The coordinates filename can be selected using the Select Filename… button.
If your filename ends in. If for some reason, the pdb file that you read does not have a space group, or has the wrong space group, then you can set it using the following function:.
By default anisotropic atom information is not represented You cannot currently display thermal ellipsoids 47 for isotropic atoms. Symmetry atoms can be labeled Every time you recentre, the symmetry coordinates are updated. The information shown contains the atom information and the symmetry operation number and translations needed to generate the atom in that position. Coot generates symmetry related atoms by moving the current set close to the origin by a translation, performing the symmetry expansion around the origin and moving the the symmetry coordinates back by applying the inverse of the origin translation.
The origin translation is also displayed in curly braces, e. Sometimes rarely coot misses symmetry-related molecules that should be displayed. In that case you need to expand the shift search the default is 1 :. The protein is represented by one letter codes and coloured according to secondary structure. These one letter codes are active - if you click on them, they will change the centre of the graphics window - in much the same way as clicking on a residue in the Ramachandran plot.
Use can use this to cut and paste into other applications:. Contacts to other residues are shown and to symmetry-related atoms if symmetry is being displayed. The contacts are coloured by atom type The result is displayed graphically, and written to the console.
There is no internal mechanism to change the radius according to atom type. With some cleverness you might be able to call this function several times and change the radius according to the atom selection.
There is a function to clear up the dots for a particular molecule imol and dots set identifier dots-handle. There is a function to return how many dots sets there are for a particular molecule imol :. Coot can be used to calculate the mean average and median temperatures factors:.
You can specify the specific chains that you wish to match using the "Use Specific Chain" check-button. Otherwise, move-copy-flag should be 0. Here, imol-ligand is the molecule number of the ligand which is presumed to be a a molecule on its own - Coot simply takes the first residue that it finds.
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